ExPASy_SIB
MyHits
MSA Hub
user:
GUEST
width:
600
Tools
Search ...
Pattern Search
BLASTP/PSI-BLAST
CS-BLAST
PFSEARCH (profile)
HMMER3 (profile-HMM)
Motif Scan
Query ...
by Protein
by Motif
Align...
MAFFT
TCOFFEE
Profile Align
Classify ...
JACOP
MkDom2
Tools ...
Reformat MSA
Reformat SEQ
Dotlet
Hub
Protein Hub
MSA Hub
Results
Stored results
Private area
Misc
Help Pages
HitKeeper
Database status
Query summary
Deprecated
Search...
HMMER2 (profile-HMM)
Align...
CLUSTALW
Translate ...
Translator
ESTScan
MSA Input
multiple sequence alignment (MSA)
examples
multiple FASTA format
ALN/ClustalW format
send results to...
...to PSI-blast search (fast)
...to CS-blast search (fast)
...to PFTOOLS Search (profile, slow)
...to HMMER2 Search (profile-HMM, slow)
...to HMMER3 Search (profile-HMM, slow)
...to Profile Align (slow)
...to T-Coffee (re-align, slow)
...to M-Coffee (re-align, slow)
...to Expresso (re-align with struct., slower)
...to ClustalW (re-align)
...to MAFFT (re-align, fast)
...to Core (MSA consistency evaluation)
...to ProtoGene (CDS retrieval)
...to RAxML (phylogenetic tree)
...to BoxShade (pretty output)
...to Reformat MSA (your sequences)
...to Protein Hub
Selector
Selector
Inspect the following information
ID
AC
DT
DE
GN
OS
OG
OC
OX
Reference lines
CC
DR
KW
FT
Sequence lines
Pre-select proteins by comparing their mutual identities
100 % (all)
90 %
80 %
70 %
60 %
50 %
Catalogue
Catalogue
: Sequence Element Viewer. Retrieve the original entry and annotations
Output selection
HTML walker [5 prot./page]
HTML walker [10 prot./page]
HTML walker [50 prot./page]
PDF/postscript on A4
Pixel per residue
0.2
0.5
1
2
3
4
5
Graphic options
to scale on multiple line
to scale on a single line
shrink to fit line width
Display weak matches
Yes
No
Jalview2
Jalview2
: A java applet to visualize and edit the above MSA, and to send it back here
SEView
SEView
: Java Based Sequence Element Viewer. Retrieve the original entry and annotations
Number of proteins per page
1
5
10
20
50
Display weak matches
Yes
No