WWW Services on this site
- Essential queries and operations (HTML query forms):
- connect Connect (if you have an account, useless otherwise)
- seq_query Query the sequences
- mot_query Query the motifs
- cla_query Query the classifications (e.g. Taxonomy)
- hit_query Query the list of hit (sequence vs motif)
- hat_query Query the list of hat (sequence vs classification)
- hot_query Query the list of hot (motif vs classification)
- mom_query Query the list of hit using metamotif, i.e. motif of motif
- Exhaustive list of all queries and operations (HTML query forms)
Other services on this site
- REST Service: URL syntax and help
- SOAP service: WSDL file
- Command line client ('save as', and make it executable)
Help on this site
- The query syntax (interactive manual).
- Online tutorial, basically a collection of recipes.
Further Reading on the Web
HitKeeper is a collection of software tools, mainly written in Perl/SQL, intended to help bioinformatic researchers with "friendly" tools. It allows fully automatic handling of multiple databases on a large scale, calculation of "hits", and querying.
- The Project website at sourceforge.net, and the svn repository.
- Reference: J. Hau, M. Muller, M. Pagni. HitKeeper, a generic software package for hit list management. Source Code for Biology and Medicine 2 (2007), 2.